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Setting Up Payroll for Small Businesses in the Philippines: A Comprehensive Guide

3:55 PM GMT+0800 · May 20, 2024

Setting up payroll is a critical task for small business owners in the Philippines. It involves understanding and complying with local labor laws, and tax regulations, and ensuring that employees are paid accurately and on time.

There is no one stop guide in setting payroll. But hold still, this guide will walk you through the essential steps to establish a payroll system that is both compliant and efficient.

Understanding Philippine Payroll Requirements

The first step is to understand the Philippine Payroll Requirements. The item below can help you get started.

Legal Obligations. Familiarize yourself with the Philippine government’s guidelines, policies, and laws related to payroll, including mandatory benefits and tax requirements.

Employee Classification. Determine whether your employees are full-time, part-time, exempt, or nonexempt, as this will affect their payroll calculations.

Documentation. Gather all necessary documentation, such as tax identification numbers (TINs) and bank account information, to set up your employee payroll.

Registering Your Business and Employees

You can skip this part if this is already done. But if you are a new business keep this part in mind to avoid hassle in the future.

Business Registration. Register your company with the Bureau of Internal Revenue (BIR) to obtain an employer identification number.

Employee Registration. Ensure new hires are registered with the Social Security System (SSS), Philippine Health Insurance Corporation (Philhealth), and Home Development Mutual Fund (HDMF) within 30 days of their hire date.

Payroll Schedule and Processing

Here is the exciting part. Everyone is happy when their salary is disbursed on time. So don’t compromise your employee satisfaction and keep in mind some of the tips here.

Determining Pay Schedule. Decide on a pay schedule that suits your business operations, whether it’s weekly, bi-weekly, semi-monthly, or monthly.

Payroll Calculations. Choose whether to calculate payroll manually, use Excel, or invest in payroll software or services.

Payment Methods. Decide on the method of payment, such as direct deposit, pay cards, manual checks, or cash, while considering the popularity and legal implications of each.

Benefits and Deductions

Part of setting up a payroll system is the calculation of benefits and deductions. If you want to ensure that your business is compliant with the necessary compensation, you can base it on the list below.

Mandatory Benefits. Understand and manage mandatory benefits such as 13th Month Pay, retirement pay, night shift differential, service charges, and paid leave.

Government Contributions. Ensure compliance with contributions to the SSS, PhilHealth, and HDMF.

Tax Withholding. Calculate and withhold the correct tax amounts, and remit them as required.

Payroll Software and Automation

As businesses grow, the task of managing payroll can become complex and time-consuming. Modern solutions such as robust payroll software and automation can significantly simplify this process.

Software Solutions. Consider investing in robust payroll software to streamline the process, reduce errors, and save time.

Automation Benefits. Automated payroll systems can lead to motivated employees, fewer human errors, better cash management, reduced legal risks, and more time for value-creating activities.

Record Keeping and Compliance

Next part is record keeping and compliance where you will get ideas on how to maintain employee record at ease.

Maintaining Records. Keep accurate records of all payroll transactions, employee earnings, and tax payments for at least three years.


Data Security.
Ensure the security of payroll data to protect sensitive employee information.


Professional Assistance.
Seek professional help when needed to navigate complex payroll and tax regulations.

Additional Resources for Setting up Payroll

Payroll Software Recommendations. Explore payroll software options like SATO Den Payroll System, which are designed to cater to the needs of small businesses in the Philippines.

Government Websites. Visit the official websites of the BIR, SSS, Philhealth, and HDMF for the latest updates on payroll-related regulations.

Final Thoughts

Setting up payroll in the Philippines requires careful planning and attention to detail. By following these steps, small business owners can setup a payroll system that is compliant with local laws, efficient in its operations, and beneficial for both the employer and employees.

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